Publications 2025
Beyond first light: Global monitoring for high-energy neutrino astronomy
Schumacher, L. J., Bustamante, M., Agostini, M. et al., 2025, Phys. Rev. D, 112, 083027 - DOI: 10.1103/lxx2-ss5w - ArXiv: 2503.07549
Identifying energy-dependent flavor transitions in high-energy astrophysical neutrino measurements
Liu, Q., Fiorillo, D. F. G., Argüelles, C. A. et al., 2025, Phys. Rev. D, 112, 043019 - DOI: 10.1103/vrjj-h27p - ArXiv: 2312.07649
Probing Lorentz invariance with a high-energy neutrino flare
Bustamante, M., Ellis, J., Konoplich, R. et al., 2025, Phys. Rev. D, 111, 123031 - DOI: 10.1103/yyv3-mtmy - ArXiv: 2408.15949
Flavor anisotropy in the high-energy astrophysical neutrino sky
Telalovic, B., Bustamante, M., 2025, jcap, 2025, 013 - DOI: 10.1088/1475-7516/2025/05/013 - ArXiv: 2310.15224
GRANDlib: A simulation pipeline for the Giant Radio Array for Neutrino Detection (GRAND)
Alves Batista, R., Benoit-Lévy, A., Bister, T. et al., 2025, Computer Physics Communications, 308, 109461 - DOI: 10.1016/j.cpc.2024.109461
The Unknowns of the Diffuse Supernova Neutrino Background Hinder New Physics Searches
MacDonald, M., Martínez-Miravé, P., Tamborra, I., 2025, JCAP, 01, 062 - DOI: 10.1088/1475-7516/2025/01/062 - ArXiv: 2409.16367
Nonconservation of Lepton Numbers in the Neutrino Sector Could Change the Prospects for Core Collapse Supernova Explosions
Suliga, A. M., Cheong, P. C.-K., Froustey, J. et al., 2025, Phys. Rev. Lett., 134, 241002 - DOI: 10.1103/gnp5-4y8k - ArXiv: 2410.01080
A fast X-ray transient from a weak relativistic jet associated with a type Ic-BL supernova
Sun, H. et al., 2025, Nature Astron., 9, 1073–1085 - DOI: 10.1038/s41550-025-02571-1 - ArXiv: 2410.02315
Quantifying the impact of the Si/O interface in CCSN explosions using the Force Explosion Condition
Boccioli, L., Gogilashvili, M., Murphy, J. et al., 2025, Mon. Not. Roy. Astron. Soc., 537, 1182–1196 - DOI: 10.1093/mnras/staf066 - ArXiv: 2410.17232
Subphotospheric Emission from Short Gamma-Ray Bursts. II. Signatures of Nonthermal Dissipation in the Multi-messenger Signals
Rudolph, A., Tamborra, I., Gottlieb, O., 2025, Astrophys. J., 983, 34 - DOI: 10.3847/1538-4357/adbd3e - ArXiv: 2410.23258
Fast flavor pendulum: Instability condition
Fiorillo, D. F. G., Goimil-García, M., Raffelt, G. G., 2025, Phys. Rev. D, 111, 083028 - DOI: 10.1103/PhysRevD.111.083028 - ArXiv: 2412.09027
Neutrinos from explosive transients at the dawn of multi-messenger astronomy
Tamborra, I., 2025, Nature Rev. Phys., 7, 285–298 - DOI: 10.1038/s42254-025-00828-2 - ArXiv: 2412.09699
Pauli blocking: Probing beyond-mean-field effects in neutrino flavor evolution
Goimil-García, M., Shalgar, S., Tamborra, I., 2025, Phys. Rev. D, 111, 083054 - DOI: 10.1103/PhysRevD.111.083054 - ArXiv: 2412.12268
Polarization of Gamma-Ray Burst Afterglows in the Context of Non-axisymmetric Structured Jets
Li, J.-D., Gao, H., Ai, S. et al., 2025, Astrophys. J., 978, 124 - DOI: 10.3847/1538-4357/ad9004 - ArXiv: 2412.01228
Multiple Rebrightenings in the Optical Afterglow of GRB 210731A: Evidence for an Asymmetric Jet
Li, J.-D., Gao, H., Ai, S. et al., 2025, Astrophys. J., 978, 116 - DOI: 10.3847/1538-4357/ad90ac - ArXiv: 2412.01229
Prospect of Gamma-Ray Burst Neutrino Detection with Enhanced Neutrino Detectors
Lian, W., Ai, S., Gao, H., 2025, Astrophys. J., 987, 79 - DOI: 10.3847/1538-4357/add1db - ArXiv: 2412.16868
Identifying Thorne–Żytkow Objects through Neutrinos
Martínez-Miravé, P., Tamborra, I., Vigna-Gómez, A., 2025, Astrophys. J. Lett., 984, L2 - DOI: 10.3847/2041-8213/adc8ab - ArXiv: 2501.03330
Neutrino quantum kinetics in three flavors
Shalgar, S., Tamborra, I., 2025, JCAP, 12, 026 - DOI: 10.1088/1475-7516/2025/12/026 - ArXiv: 2503.03835
Diagnosing electron-neutrino lepton number crossings in core-collapse supernovae: A comparison of methods
Cornelius, M., Tamborra, I., Heinlein, M. et al., 2025, Phys. Rev. D, 112, 063004 - DOI: 10.1103/gqd7-4ynz - ArXiv: 2506.20723
Constraining Magnetar Parameters by Taking into Account the Evolutionary Effects of Radius and Moment of Inertia with Swift/XRT Data
Lan, L., Gao, H., Ai, S. et al., 2025, Astrophys. J. Suppl., 280, 45 - DOI: 10.3847/1538-4365/adefe4 - ArXiv: 2507.11110
Electron-neutrino lepton number crossings: Variations with the supernova core physics
Cornelius, M., Tamborra, I., Heinlein, M. et al., 2025, Phys. Rev. D, 112, 063006 - DOI: 10.1103/n2h5-3qwz - ArXiv: 2507.13429
Collapsar disk outflows: Detectable neutrino and gravitational wave signatures
Fernández, R., Janke, S., Dean, C. et al., 2025, Phys. Rev. D, 112, 123047 - DOI: 10.1103/d1q5-2qxx - ArXiv: 2507.17836
Steady state of fast-oscillating neutrinos in an inhomogeneous medium
Goimil-García, M., Tamborra, I., 2025, Phys. Rev. D, 112, 103011 - DOI: 10.1103/gdg9-rzns - ArXiv: 2509.22805
SN 2024cld: unveiling the complex mass-loss histories of evolved supergiant progenitors to core collapse supernovae
Killestein, T. L., Pursiainen, M., Kotak, R. et al., 2025, Mon. Not. Roy. Astron. Soc. - DOI: 10.1093/mnras/staf2261 - ArXiv: 2510.27631
Black hole merger rates in AGN: contribution from gas-captured binaries
Rowan, C., Whitehead, H., Kocsis, B., 2025, Mon. Not. Roy. Astron. Soc., 544, 4576-4589 - DOI: 10.1093/mnras/staf1896 - ArXiv: 2412.12086
Discovery and analysis of afterglows from poorly localized GRBs with the Gravitational-wave Optical Transient Observer (GOTO) All-sky Survey
Kumar, A., Gompertz, B. P., Schneider, B. et al., 2025, Mon. Not. Roy. Astron. Soc., 544, 1541-1587 - DOI: 10.1093/mnras/staf1689 - ArXiv: 2509.09827
Hot, Cold, and Multicomponent Accretion Flows around Supermassive Black Hole Binaries
Tiede, C., D'Orazio, D. J., 2025, Astrophys. J., 995, 68 - DOI: 10.3847/1538-4357/ae17ba - ArXiv: 2508.11748
Distinguishing the Origin of Eccentric Black Hole Mergers with Gravitational-wave Spin Measurements
Stegmann, J., Gerosa, D., Romero-Shaw, I. et al., 2025, Astrophys. J.l, 994, L47 - DOI: 10.3847/2041-8213/ae1d66 - ArXiv: 2505.13589
Importance of relativistic pericenter precession in identifying the presence of a third body near eccentric binaries
Saini, P., Zwick, L., Takátsy, J. et al., 2025, Phys. Rev. D, 112, 103047 - DOI: 10.1103/8bt1-xgh4 - ArXiv: 2508.17348
GRB 241105A: a test case for GRB classification and rapid r-process nucleosynthesis channels
Dimple, Gompertz, B. P., Levan, A. J. et al., 2025, Mon. Not. Roy. Astron. Soc., 544, 548-571 - DOI: 10.1093/mnras/staf1574 - ArXiv: 2507.15940
Hydrodynamic simulations of black hole evolution in AGN discs II: inclination damping for partially embedded satellites
Whitehead, H., Rowan, C., Kocsis, B., 2025, Mon. Not. Roy. Astron. Soc., 543, 3768-3782 - DOI: 10.1093/mnras/staf1686 - ArXiv: 2505.23899
SN 2024bfu, SN 2025qe, and the early light curves of type Iax supernovae
Magee, M. R., Killestein, T. L., Pursiainen, M. et al., 2025, Mon. Not. Roy. Astron. Soc., 543, 3731-3753 - DOI: 10.1093/mnras/staf1675 - ArXiv: 2506.02118
The construction and use of dephasing prescriptions for environmental effects in gravitational wave astronomy
Takátsy, J., Zwick, L., Hendriks, K. et al., 2025, Classical and Quantum Gravity, 42, 215006 - DOI: 10.1088/1361-6382/ae0fd4 - ArXiv: 2505.09513
Stellar Stripping and Disruption in Disks around Supermassive Black Hole Binaries: Repeating Nuclear Transients Prior to LISA Events
D'Orazio, D. J., Tiede, C., Zwick, L. et al., 2025, Astrophys. J., 994, 112 - DOI: 10.3847/1538-4357/ae0c9d - ArXiv: 2501.10509
Gravitational Wave Decoupling in Retrograde Circumbinary Disks
O'Neill, D., Tiede, C., D'Orazio, D. J. et al., 2025, Astrophys. J., 993, 206 - DOI: 10.3847/1538-4357/ae0ca8 - ArXiv: 2501.11679
Bridging the micro-Hz gravitational wave gap via Doppler tracking with the Uranus Orbiter and Probe mission: Massive black hole binaries, early Universe signals, and ultralight dark matter
Zwick, L., Soyuer, D., D'Orazio, D. J. et al., 2025, Phys. Rev. D, 112, 083029 - DOI: 10.1103/qp2h-y4b2 - ArXiv: 2406.02306
Limits on the ejecta mass during the search for kilonovae associated with neutron star-black hole mergers: A case study of S230518h, GW230529, S230627c and the low-significance candidate S240422ed
Pillas, M., Antier, S., Ackley, K. et al., 2025, Phys. Rev. D, 112, 083002 - DOI: 10.1103/6ld6-95xh - ArXiv: 2503.15422
Gas meets Kozai: the influence of a gas-rich accretion disc on hierarchical triples undergoing von Zeipel–Lidov–Kozai oscillations
Su, Y., Rowan, C., Rozner, M., 2025, Mon. Not. Roy. Astron. Soc., 543, 1864-1877 - DOI: 10.1093/mnras/staf1592 - ArXiv: 2505.23889
Hydrodynamic simulations of black hole evolution in AGN discs – I. Orbital alignment of highly inclined satellites
Rowan, C., Whitehead, H., Fabj, G. et al., 2025, Mon. Not. Roy. Astron. Soc., 543, 132-145 - DOI: 10.1093/mnras/staf1449 - ArXiv: 2505.23739
Environmental Effects in Stellar Mass Gravitational-wave Sources. I. Expected Fraction of Signals with Significant Dephasing in the Dynamical and Active Galactic Nucleus Channels
Zwick, L., Takátsy, J., Saini, P. et al., 2025, Astrophys. J., 991, 131 - DOI: 10.3847/1538-4357/adf6b8 - ArXiv: 2503.24084
Testing compact massive black hole binary candidates through multi-epoch spectroscopy
Bertassi, L., Sottocorno, E., Rigamonti, F. et al., 2025, Astron. Astrophys., 702, A165 - DOI: 10.1051/0004-6361/202554574 - ArXiv: 2504.06349
GW200208_222617 as an eccentric black-hole binary merger: Properties and astrophysical implications
Romero-Shaw, I., Stegmann, J., Tagawa, H. et al., 2025, Phys. Rev. D, 112, 063052 - DOI: 10.1103/jj7m-x66y - ArXiv: 2506.17105
Dissecting environmental effects with eccentric gravitational wave sources
Zwick, L., Hendriks, K., O'Neill, D. et al., 2025, Phys. Rev. D, 112, 063005 - DOI: 10.1103/lz7k-bvjf - ArXiv: 2506.09140
A high fraction of close massive binary stars at low metallicity
Sana, H., Shenar, T., Bodensteiner, J. et al., 2025, Nature Astronomy, 9, 1337-1346 - DOI: 10.1038/s41550-025-02610-x - ArXiv: 2509.12488
3D adiabatic simulations of binary black hole formation in AGN discs
Whitehead, H., Rowan, C., Kocsis, B., 2025, Mon. Not. Roy. Astron. Soc., 542, 1033-1055 - DOI: 10.1093/mnras/staf1271 - ArXiv: 2502.14959
Rapid Stellar and Binary Population Synthesis with COMPAS: Methods Paper II
Compas, T., Mandel, I., Riley, J. et al., 2025, Astrophys. J.s, 280, 43 - DOI: 10.3847/1538-4365/adf8d0 - ArXiv: 2506.02316
Gravitational-wave Phase Shifts in Eccentric Black Hole Mergers as a Probe of Dynamical Formation Environments
Samsing, J., Hendriks, K., Zwick, L. et al., 2025, Astrophys. J., 990, 211 - DOI: 10.3847/1538-4357/ad9f3d - ArXiv: 2403.05625
The Host Galaxies of Pulsar Timing Array Sources: Converting Supermassive Black Hole Binary Parameters into Electromagnetic Observables
Veronesi, N., Charisi, M., Taylor, S. R. et al., 2025, Astrophys. J., 990, 46 - DOI: 10.3847/1538-4357/adf065 - ArXiv: 2505.11598
The impact of natal kicks on black hole binaries
Vigna-Gómez, A., 2025, Astron. Astrophys., 701, L3 - DOI: 10.1051/0004-6361/202556051 - ArXiv: 2507.07573
The Proper Motion of Strongly Lensed Binary Neutron Star Mergers in LIGO/Virgo/Kagra Can Be Constrained by Measuring Doppler-induced Gravitational-wave Dephasing
Zwick, L., Samsing, J., 2025, Astrophys. J., 988, 272 - DOI: 10.3847/1538-4357/adea54 - ArXiv: 2502.03547
Binarity at LOw Metallicity (BLOeM): Bayesian inference of natal kicks from inert black hole binaries
Willcox, R., Marchant, P., Vigna-Gómez, A. et al., 2025, Astron. Astrophys., 700, A59 - DOI: 10.1051/0004-6361/202555274 - ArXiv: 2504.16669
A magnetic tertiary in the most massive compact triple-star system
Hubrig, S., Vigna-Gómez, A., Järvinen, S. P. et al., 2025, Mon. Not. Roy. Astron. Soc., 541, L80-L84 - DOI: 10.1093/mnrasl/slaf051 - ArXiv: 2505.12852
Prompt stellar and binary black hole mergers in tight triples: Insights from chemically homogeneous evolution
Vigna-Gómez, A., Grishin, E., Stegmann, J. et al., 2025, Astron. Astrophys., 699, A272 - DOI: 10.1051/0004-6361/202554680 - ArXiv: 2503.17006
GOTO065054+593624: An 8.5 mag amplitude dwarf nova identified in real time via Kilonova Seekers
Killestein, T. L., Ramsay, G., Kennedy, M. et al., 2025, Astron. Astrophys., 699, A8 - DOI: 10.1051/0004-6361/202553823 - ArXiv: 2501.11524
Quantifying the Impact of the Dust Torque on the Migration of Low-mass Planets. II. The Role of Pebble Accretion in Planet Growth within a Global Planet Formation Model
Guilera, O. M., Benitez-Llambay, P., Miller Bertolami, M. M. et al., 2025, Astrophys. J., 986, 199 - DOI: 10.3847/1538-4357/add92a - ArXiv: 2501.16169
Eccentric Features in the Gravitational-wave Phase of Dynamically Formed Black Hole Binaries
Hendriks, K., Zwick, L., Samsing, J., 2025, Astrophys. J., 985, 252 - DOI: 10.3847/1538-4357/adcb35 - ArXiv: 2408.04603
Binarity at LOw Metallicity (BLOeM): Multiplicity properties of Oe and Be stars
Bodensteiner, J., Shenar, T., Sana, H. et al., 2025, Astron. Astrophys., 698, A38 - DOI: 10.1051/0004-6361/202452623 - ArXiv: 2502.02641
Gravitational wave astronomy with TianQin
Li, E.-K., Liu, S., Torres-Orjuela, A. et al., 2025, Reports on Progress in Physics, 88, 056901 - DOI: 10.1088/1361-6633/adc9be - ArXiv: 2409.19665
Prompt gravitational-wave mergers aided by gas in active galactic nuclei: the hydrodynamics of binary-single black hole scatterings
Rowan, C., Whitehead, H., Fabj, G. et al., 2025, Mon. Not. Roy. Astron. Soc., 539, 1501-1515 - DOI: 10.1093/mnras/staf547 - ArXiv: 2501.09017
Suppressed Accretion onto Massive Black Hole Binaries Surrounded by Thin Disks
Tiede, C., Zrake, J., MacFadyen, A. et al., 2025, Astrophys. J., 984, 144 - DOI: 10.3847/1538-4357/adc727 - ArXiv: 2410.03830
An effective model for magnetic field amplification by the magnetorotational and parasitic instabilities
Miravet-Tenés, M., Pessah, M. E., 2025, Astron. Astrophys., 696, A2 - DOI: 10.1051/0004-6361/202452953 - ArXiv: 2411.05064
Optical evolution of AT 2024wpp: the high-velocity outflows in Cow-like transients are consistent with high spherical symmetry
Pursiainen, M., Killestein, T. L., Kuncarayakti, H. et al., 2025, Mon. Not. Roy. Astron. Soc., 537, 3298-3309 - DOI: 10.1093/mnras/staf232 - ArXiv: 2411.03272
Deep Neural Emulation of the Supermassive Black Hole Binary Population
Laal, N., Taylor, S. R., Kelley, L. Z. et al., 2025, Astrophys. J., 982, 55 - DOI: 10.3847/1538-4357/adb4ef - ArXiv: 2411.10519
Using Detailed Single-star and Binary-evolution Models to Probe the Large Observed Luminosity Spread of Red Supergiants in Young Open Star Clusters
Wang, C., Patrick, L., Schootemeijer, A. et al., 2025, Astrophys. J.l, 981, L16 - DOI: 10.3847/2041-8213/adb61a - ArXiv: 2502.13642
Mapping the Outcomes of Stellar Evolution in the Disks of Active Galactic Nuclei
Fabj, G., Dittmann, A. J., Cantiello, M. et al., 2025, Astrophys. J., 981, 16 - DOI: 10.3847/1538-4357/ada896 - ArXiv: 2408.16050
The formation of mini-AGN discs around IMBHs and their dynamical implications
Rozner, M., Trani, A. A., Samsing, J. et al., 2025, Mon. Not. Roy. Astron. Soc., 537, 1220-1231 - DOI: 10.1093/mnras/staf072 - ArXiv: 2409.13805
SN 2023tsz: a helium-interaction-driven supernova in a very low-mass galaxy
Warwick, B., Lyman, J., Pursiainen, M. et al., 2025, Mon. Not. Roy. Astron. Soc., 536, 3588-3600 - DOI: 10.1093/mnras/stae2784 - ArXiv: 2409.14147
Gravitational wave memory imprints on the CMB from populations of massive black hole mergers
Zwick, L., O'Neill, D., Hendriks, K. et al., 2025, Astron. Astrophys., 694, A95 - DOI: 10.1051/0004-6361/202450664 - ArXiv: 2404.06927
Population synthesis of Thorne-Żytkow objects: Rejuvenated donors and unexplored progenitors in the common envelope formation channel
Nathaniel, K., Vigna-Gómez, A., Grichener, A. et al., 2025, Astron. Astrophys., 694, A83 - DOI: 10.1051/0004-6361/202451531 - ArXiv: 2407.11680
The Effect of Donor Star Rejuvenation on Common Envelope Evolution
Landri, C., Ricker, P. M., Renzo, M. et al., 2025, Astrophys. J., 979, 57 - DOI: 10.3847/1538-4357/ad9d3c - ArXiv: 2407.15932
Development of convective envelopes in massive stars: Implications for gravitational wave sources
Romagnolo, A., Klencki, J., Vigna-Gómez, A. et al., 2025, Astron. Astrophys., 693, A137 - DOI: 10.1051/0004-6361/202452169 - ArXiv: 2410.17315
Emergent collective alignment gives competitive advantage to longer cells during range expansion
van den Berg, N., Thijssen, K., Nguyen, T. T. et al., 2025, Nature Communications - DOI: 10.1038/s41467-025-67791-5 - bioRxiv: 10.1101/2024.01.26.577059
Multiphase-Field Models of Tissues
Monfared, S., Ardaševa, A., Doostmohammadi, A., 2025, Annual Review of Condensed Matter Physics, 17 - DOI: 10.1146/annurev-conmatphys-060625-061354 - ArXiv: 2503.05053
Packing-Driven Mechanotransduction: local crowding overrides adhesion and stiffness cues for YAP Activation in Cellular Collectives
Grudtsyna, V., Swaminathan, V. S., Doostmohammadi, A., 2025, Journal of The Royal Society Interface, 22 - DOI: 10.1098/rsif.2024.0568 - bioRxiv: 10.1101/2025.10.03.680214
Cellular flow architecture exposes the hidden mechanics of biological matter
Ma, T., Grudtsyna, V., Bölsterli, R. V. et al., 2025, PRX Life, 3, 043012 - DOI: 10.1103/PRXLife.3.043012
Anti-hyperuniform critical states of active topological defects
Andersen, S. G., Ma, T., Katsume, M. F. et al., 2025, Reports on Progress in Physics, 88, 108101 - DOI: 10.1088/1361-6633/ae075e
Strings and topological defects govern ordering kinetics in endothelial cell layers
Ruider, I., Thijssen, K., Vannier, D. R. et al., 2025, Nature Physics, 1–9 - DOI: 10.1038/s41567-025-03014-4
Self-propulsive active nematics
de Graaf Sousa, N., Andersen, S. G., Ardaševa, A. et al., 2025, Philosophical Transactions of the Royal Society A, 383, 20240272 - DOI: 10.1098/rsta.2024.0272
Flow signatures of activity-dependent dynamics in active nematics
Bölsterli, R. V., Andersen, B. H., Doostmohammadi, A., 2025, Physical Review Fluids, 10, L071101 - DOI: 10.1103/PhysRevFluids.10.L071101
The Interplay of Polar and Nematic Order in Active Matter: Implications for Non-Equilibrium Physics and Biology
Venkatesh, V., de Graaf Sousa, N., Doostmohammadi, A., 2025, Journal of Physics A: Mathematical and Theoretical - DOI: 10.1088/1751-8121/addb92
Force transmission is a master regulator of mechanical cell competition
Rosse, C., Venkatesh, V., Balasubramaniam, L. et al., 2025, Nature Materials, 1–11 - DOI: 10.1038/s41563-025-02150-9 - bioRxiv: 10.1101/2024.12.20.627898
Evidence of universal conformal invariance in living biological matter
Safara, F. M. R., Grudtsyna, V., Meacock, O. J. et al., 2025, Nature Physics, 1–6 - DOI: 10.1038/s41567-025-02791-2
Beyond Dipolar Activity: Quadrupolar Stress Drives Collapse of Nematic Order on Frictional Substrates
Ardaševa, A., Vélez-Cerón, I., Pedersen, M. C. et al., 2025, Physical Review Letters, 134, 088301 - DOI: 10.1103/PhysRevLett.134.088301 - ArXiv: 2407.03723
Dynamic forces shape the survival fate of eliminated cells
Kocgozlu, L., Chilupuri, R., Dubey, S. et al., 2025, Nature Physics, 21, 269–278 - DOI: 10.1038/s41567-024-02716-5
Filopodia: integrating cellular functions with theoretical models
Ruhoff, V. T., Leijnse, N., Doostmohammadi, A. et al., 2025, Trends in Cell Biology, 35, 129–140 - DOI: 10.1016/j.tcb.2024.05.005
Phase diagram, confining strings, and a new universality class in nematopolar matter
Vafa, F., Doostmohammadi, A., 2025, Europhysics Letters - DOI: 10.1209/0295-5075/ae1da2 - ArXiv: 2501.04769
Quantifying the shape of cells: from Minkowski tensors to p-atic order
Happel, L., Oberschelp, G., Grudtsyna, V. et al., 2025, bioRxiv - DOI: 10.1101/2025.01.03.631196 - bioRxiv: 10.1101/2025.01.03.631196
Integrative Molecular Dynamics Simulations Untangle Cross-Linking Data to Unveil Mitochondrial Protein Distributions
Schuhmann, F., Akkaya, K. C., Puchkov, D. A. H. S. et al., 2025, Angewandte Chemie International Edition, 64, e202417804 - DOI: 10.1002/anie.202417804
TS2CG as a Membrane Builder
Schuhmann, F., Stevens, J. A., Rahmani, N. A. L. I. et al., 2025, Journal of Chemical Theory and Computation, 21, 9136–9146 - DOI: 10.1021/acs.jctc.5c00833
Bimodal Mechanical Response of Membrane Necks: Implications for the Nuclear Envelope
Geiger, B. J., Pezeshkian, W., 2025, ACS Nano - DOI: 10.1101/2025.03.10.642015 - bioRxiv: 10.1101/2025.03.10.642015
Structure of European Robin Cryptochrome 1 Reveals a Role in Circadian Rhythms, Not Magnetoreception
Wickramaratne, A. C., Rasmussen, E. S., Chelliah, Y. A. S. F. et al., 2025, iScience - DOI: 10.1016/j.isci.2025.114015
Multi-body Fluctuation-Induced Forces Between Membrane Proteins: Insights from Mesoscale Simulations
Bravo Vidal, A., Pezeshkian, W., 2025, bioRxiv - DOI: 10.1101/2025.09.12.675822 - bioRxiv: 10.1101/2025.09.12.675822
Amyloidogenic Proteolysis of APP Regulates Glutamatergic Presynaptic Function
Kapadia, A., Schuhmann, F., Daskin, E. A. W. J. et al., 2025, bioRxiv - DOI: 10.1101/2025.08.01.667924
Bringing the Genetically Minimal Cell to Life on a Computer in 4D
Thornburg, Z. R., Maytin, A., Kwon, J. A. B. T. A. et al., 2025, bioRxiv - DOI: 10.1101/2025.06.10.658899 - bioRxiv: 10.1101/2025.06.10.658899
Helfrich Monte Carlo Flexible Fitting: Physics-Based, Data-Driven Cell-Scale Simulations
Maurer, V. J., Siggel, M., Jensen, R. K. A. M. J. et al., 2025, bioRxiv - DOI: 10.1101/2025.05.24.655915
Dissecting Bioelectrical Networks in Photosynthetic Membranes with Electrochemistry
Lawrence, J. M., Egan, R. M., Wey, L. T. et al., 2025, Journal of the American Chemical Society, 147, 26907–26916 - DOI: 10.1021/jacs.5c08519
Bacterial Cell Membrane Models: Choosing the Lipid Composition
Martin, A. L., Jemmett, P. N., Howitt, T. et al., 2025, Soft Matter, 21, 7054–7073 - DOI: 10.1039/d5sm00378d
Phase Diagram, Confining Strings, and a New Universality Class in Nematic-Polar Matter
Vafa, F., Doostmohammadi, A., 2025, Europhysics Letters - DOI: 10.1209/0295-5075/ae1da2 - ArXiv: 2501.04769
Defect Ground States for Liquid Crystals on Cones and Hyperbolic Cones
Vafa, F., Zhang, G. H., Nelson, D. R., 2025, Journal of Physics A: Mathematical and Theoretical, 58, 225003 - DOI: 10.1088/1751-8121/add2e4 - ArXiv: 2405.03742
An Efficient Solution to Hidden Markov Models on Trees with Coupled Branches
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Hydrodynamics without boost-invariance from kinetic theory: From perfect fluids to active flocks
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Conformal mapping of non-Lorentzian geometries in SU(1, 2) Conformal Field Theory
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On exact overlaps of integrable matrix product states: inhomogeneities, twists and dressing formulas
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Refining Integration-by-Parts Reduction of Feynman Integrals with Machine Learning
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Dynamical Response of Viscous Objects to Gravitational Waves
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Observing of Background Electromagnetic Radiation of the Real Sky through the Throat of a Wormhole
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Observing an accretion disk inside a wormhole shadow
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